In this paper we extend an existing crank angle resolved dynamic nonlinear model of a six-cylinder 12 l turbocharged (TC) Diesel engine with exhaust valve closing (EVC) variability. Early EVC achieves a high level of internal exhaust gas recirculation (iEGR) or charge dilution in Diesel engines, and thus reduces generated oxides of nitrogen . This model is validated in steady-state conventional (fixed EVC) engine operating points. It is expected to capture the transient interactions between EVC actuation, the turbocharger dynamics, and the cylinder-to-cylinder breathing characteristics, although this has not been explicitly validated due to lack of hardware implementation. A nominal low order linear multi-input multi-output model is then identified using cycle-sampled or cycle-averaged data from the higher order nonlinear simulation model. Various low-order controllers that vary EVC to maximize the steady-state iEGR under air-to-fuel ratio (AFR) constraints during transient fueling demands are suggested based on different sensor sets. The difficulty in the control tuning arises from the fact that the EVC affects both the AFR and engine torque requiring coordination of fueling and EVC. Simulation results are shown on the full order model.